PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00136.1_g00021.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 320aa MW: 36584.1 Da PI: 8.2091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00136.1_g00021.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.2	1.9e-54	10	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkat Sme2.5_00136.1_g00021.1 10 LPPGFRFHPTDEELITHYLSKKVVDANFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKAT 94 79***********************999.88***********98999***************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ +++lvg+kktLvfykgrap+gekt+Wv heyrle Sme2.5_00136.1_g00021.1 95 GKDKEIFR-GRSLVGMKKTLVFYKGRAPRGEKTNWVTHEYRLE 136 ****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-61	5	160	IPR003441	NAC domain
PROSITE profile	PS51005	58.144	10	160	IPR003441	NAC domain
Pfam	PF02365	6.7E-28	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDDQQQQMEL PPGFRFHPTD EELITHYLSK KVVDANFSAI AIGDVDMNKI EPWELPWKAK 60 IGEKEWYFFC VRDKKYPTGL RTNRATAAGY WKATGKDKEI FRGRSLVGMK KTLVFYKGRA 120 PRGEKTNWVT HEYRLEGRLS LQNLPKTVKN DWVICRVFQK TTGGKKIHIS GLVRGNSDEN 180 ETGNSHSLLP PLTDSSPSHV HCFSNYVTAQ KNQESNMINS FNTCPNFSIL SNSNDIFQRN 240 SLPNAFTWNQ TVPLQHNFPQ PGSFPLQDPA TLRNLLENYG QQSFKKETDI ISASQETGIS 300 TDMNTEITSA QQDLDCFWTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	3	166	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	3	166	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	3	166	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	3	166	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	3	166	13	174	NAC domain-containing protein 19
3swm_B	4e-55	3	166	13	174	NAC domain-containing protein 19
3swm_C	4e-55	3	166	13	174	NAC domain-containing protein 19
3swm_D	4e-55	3	166	13	174	NAC domain-containing protein 19
3swp_A	4e-55	3	166	13	174	NAC domain-containing protein 19
3swp_B	4e-55	3	166	13	174	NAC domain-containing protein 19
3swp_C	4e-55	3	166	13	174	NAC domain-containing protein 19
3swp_D	4e-55	3	166	13	174	NAC domain-containing protein 19
4dul_A	4e-55	3	166	10	171	NAC domain-containing protein 19
4dul_B	4e-55	3	166	10	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-175	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308203.1	0.0	NAC domain-containing protein
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K4BL87	0.0	K4BL87_SOLLC; Uncharacterized protein
STRING	Solyc03g115850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-117	NAC domain containing protein 100